usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 16.75745 -7.25985 16.67065 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1033 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 677 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 672 Number of spheres polar: 191, nonpolar: 345, out of current total: 672 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.95743 26.75146 -17.09378 2.74000 6.86476 26.65921 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 212 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 170 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 159 Spheres center of coords (x y z): 18.511369245283 -9.30933974842767 17.4125501257862 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.02574660216191 Final number of output spheres is: 45 Number of polar spheres: 14 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 20