usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 19.68035 -15.03205 19.0063 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1015 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 678 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 659 Number of spheres polar: 138, nonpolar: 362, out of current total: 659 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.81764 29.63673 -21.33991 -5.04206 9.63798 29.00051 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 270 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 204 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 165 Spheres center of coords (x y z): 18.9786063030303 -12.1502338787879 16.7005450909091 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.50618349716542 Final number of output spheres is: 45 Number of polar spheres: 5 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 19 Final number of spheres that are from crystallographic ligand: 20