usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 16.9436538461538 -6.25973076923077 14.3405 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1284 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 537 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 536 Number of spheres polar: 110, nonpolar: 344, out of current total: 536 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.96536 26.90891 -16.25346 3.66751 4.38975 24.33940 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 177 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 149 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 132 Spheres center of coords (x y z): 18.9833504545455 -9.86728840909091 14.4805126515152 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.83564581088991 Final number of output spheres is: 45 Number of polar spheres: 6 Number of nonpolar spheres: 38 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 26