usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 16.4917586206897 -6.67044827586207 14.1329655172414 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1220 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 585 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 585 Number of spheres polar: 129, nonpolar: 378, out of current total: 585 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.67709 26.34682 -16.65800 3.32769 4.21390 24.04152 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 295 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 259 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 246 Spheres center of coords (x y z): 18.5993293089431 -10.038168699187 14.092952398374 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.44374835176811 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 45 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 29