usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 16.3312068965517 -7.0148275862069 14.0830689655172 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1241 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 619 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 619 Number of spheres polar: 127, nonpolar: 388, out of current total: 619 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.33993 26.26844 -16.98578 2.95932 4.25610 24.06914 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 324 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 281 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 265 Spheres center of coords (x y z): 18.4600867169811 -10.1547325283019 13.7157734716981 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.37422794366368 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 42 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 29