usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 37.5830714285714 43.0342857142857 18.3977857142857 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1152 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 542 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 526 Number of spheres polar: 114, nonpolar: 280, out of current total: 526 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 27.60700 47.57873 33.13265 53.03075 8.61241 28.38329 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 190 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 164 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 147 Spheres center of coords (x y z): 37.551311292517 45.1915295918367 19.1433441496599 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.52699845781833 Final number of output spheres is: 45 Number of polar spheres: 7 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 28