usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 16.4223448275862 -6.44737931034483 14.1629310344828 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1227 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 633 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 633 Number of spheres polar: 166, nonpolar: 391, out of current total: 633 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.46410 26.32230 -16.43496 3.54098 4.23634 24.08555 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 203 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 163 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 150 Spheres center of coords (x y z): 18.652182 -9.9636108 14.1454091333333 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.54178284455109 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 29