usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 16.534375 -7.66608333333333 13.609375 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1186 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 619 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 610 Number of spheres polar: 143, nonpolar: 339, out of current total: 610 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.54883 26.53032 -17.63265 1.46466 3.64283 23.54658 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 320 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 282 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 256 Spheres center of coords (x y z): 18.3545694921875 -11.155673984375 13.58103796875 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.44298202774957 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 44 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 24