Distance from surface specified: 1.80 There are 29 ligand heavy atoms Ligand center of coords (x y z): 16.6453448275862 -6.7141724137931 14.1237931034483 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 12158 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 10545 WARNING: removing a crystallographic sphere that is distance 1.89914243804934 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 1.5591504096783 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 9929 Number of spheres polar: 5477, nonpolar: 3630, out of current total: 9929 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 2.65600 30.63280 -20.55840 7.26760 0.12600 28.08660 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1139 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 674 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 643 Spheres center of coords (x y z): 19.520098911353 -8.06991632970449 11.7217437013997 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 11.5647120978333 Final number of output spheres is: 200 Number of polar spheres: 84 Number of nonpolar spheres: 111 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 27