usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 16.4465172413793 -6.38168965517241 14.1476896551724 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1171 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 591 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 591 Number of spheres polar: 140, nonpolar: 371, out of current total: 591 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.50179 26.38090 -16.35700 3.61521 4.25065 24.10037 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 196 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 156 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 142 Spheres center of coords (x y z): 18.9783083802817 -9.84595359154929 13.6568279577465 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.75311694787773 Final number of output spheres is: 45 Number of polar spheres: 9 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 29