usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 16.4776666666667 -7.22054166666667 15.0873333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 991 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 524 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 523 Number of spheres polar: 126, nonpolar: 307, out of current total: 523 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.58822 26.45615 -17.16634 1.99833 5.32800 24.57924 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 272 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 245 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 234 Spheres center of coords (x y z): 18.8082405128205 -9.52523196581197 14.1535674358974 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.48797170441904 Final number of output spheres is: 60 Number of polar spheres: 13 Number of nonpolar spheres: 44 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 24