usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 16.4856666666667 -7.22 15.0937916666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1013 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 530 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 529 Number of spheres polar: 124, nonpolar: 316, out of current total: 529 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.64573 26.47421 -17.16968 1.97589 5.31611 24.58242 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 187 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 155 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 146 Spheres center of coords (x y z): 18.8066723972603 -10.1051511643836 14.5530082191781 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.01832413690723 Final number of output spheres is: 45 Number of polar spheres: 9 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 24