usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 16.4767777777778 -5.54805555555556 13.6977222222222 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 974 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 456 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 456 Number of spheres polar: 120, nonpolar: 256, out of current total: 456 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.48907 26.46300 -15.50800 4.29616 4.59817 23.66607 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 230 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 202 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 173 Spheres center of coords (x y z): 18.7161098843931 -9.40461364161849 14.0184061271676 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.50429223086444 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 41 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 18