usefragsph not on There are 11 ligand heavy atoms Ligand center of coords (x y z): 16.9281818181818 25.0343636363636 62.6103636363636 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 792 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 431 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 428 Number of spheres polar: 99, nonpolar: 223, out of current total: 428 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.13479 26.88935 15.09875 35.01375 52.74577 72.25931 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 244 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 218 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 195 Spheres center of coords (x y z): 19.6756094871795 21.3892791282051 60.7392906153846 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.77334137509938 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 11