usefragsph not on There are 8 ligand heavy atoms Ligand center of coords (x y z): 16.552875 24.7865 62.64775 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 894 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 555 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 549 Number of spheres polar: 192, nonpolar: 243, out of current total: 549 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.56558 26.53856 14.86491 34.67725 52.73594 72.48252 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 293 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 242 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 213 Spheres center of coords (x y z): 18.6475843661972 20.9931472769953 60.0456136150235 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.42746268610539 Final number of output spheres is: 60 Number of polar spheres: 11 Number of nonpolar spheres: 38 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 8