usefragsph not on There are 12 ligand heavy atoms Ligand center of coords (x y z): 17.2706666666667 25.0046666666667 62.3453333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 811 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 503 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 494 Number of spheres polar: 125, nonpolar: 240, out of current total: 494 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.31532 27.17491 15.01334 34.99206 52.36555 72.14553 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 161 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 134 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 120 Spheres center of coords (x y z): 19.302394 21.3196213333333 60.903493 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.35637837513194 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 12