usefragsph not on There are 10 ligand heavy atoms Ligand center of coords (x y z): 16.9158 24.3348 62.765 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 731 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 444 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 435 Number of spheres polar: 107, nonpolar: 195, out of current total: 435 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.13769 26.90960 14.90668 34.33237 52.76866 72.24452 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 186 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 144 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 132 Spheres center of coords (x y z): 19.4668768939394 21.2929011363636 60.9469337121212 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.54841682552651 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 10