usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): -20.4701851851852 9.17588888888889 -11.4281851851852 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1243 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 610 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 587 Number of spheres polar: 91, nonpolar: 335, out of current total: 587 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -30.45751 -10.49239 -0.73870 19.11066 -18.68828 -1.46944 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 206 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 182 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 176 Spheres center of coords (x y z): -23.4625507386364 8.62668522727273 -9.56237892045455 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.37196126867451 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 27