usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 17.8990869565217 -7.97869565217391 17.6610869565217 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 985 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 539 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 539 Number of spheres polar: 133, nonpolar: 217, out of current total: 539 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 8.14626 27.78800 -17.73678 1.64097 7.81209 26.63973 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 307 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 260 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 236 Spheres center of coords (x y z): 19.593282161017 -11.041683940678 15.6430400847458 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.75029595449654 Final number of output spheres is: 60 Number of polar spheres: 11 Number of nonpolar spheres: 38 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 23