usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 16.87935 -7.82155 16.70555 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 694 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 428 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 423 Number of spheres polar: 99, nonpolar: 234, out of current total: 423 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.87968 26.73624 -17.63089 1.93085 7.49479 26.69386 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 234 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 204 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 183 Spheres center of coords (x y z): 18.5132595628415 -11.0025046448087 15.5912338251366 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.8299856343318 Final number of output spheres is: 60 Number of polar spheres: 12 Number of nonpolar spheres: 45 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 20