usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 17.4781724137931 9.65051724137931 -11.4126896551724 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1422 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 691 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 691 Number of spheres polar: 158, nonpolar: 422, out of current total: 691 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.48678 27.45613 -0.21592 18.35140 -21.39794 -1.45998 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 358 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 308 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 285 Spheres center of coords (x y z): 21.2946345263158 8.47206473684211 -11.9560018596491 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.01655906757179 Final number of output spheres is: 60 Number of polar spheres: 12 Number of nonpolar spheres: 46 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 29