usefragsph not on
There are 29 ligand heavy atoms
Ligand center of coords (x y z): 4.77751724137931 -11.3842413793103 0.766551724137931
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1331
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 772
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 772
Number of spheres polar: 153, nonpolar: 491, out of current total: 772
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -5.15315 14.74364 -21.25540 -2.77155 -9.19080 9.74723
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 387
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 344
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 325
Spheres center of coords (x y z): 8.75680307692308 -13.2800348923077 -0.165452276923077
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.9563872075887
Final number of output spheres is: 60
Number of polar spheres: 10
Number of nonpolar spheres: 48
Number of spheres that are near neither polar nor nonpolar receptor atoms: 2
Final number of spheres that are from crystallographic ligand: 29