usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 16.9551739130435 -6.12573913043478 14.2822173913043 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1137 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 583 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 583 Number of spheres polar: 159, nonpolar: 341, out of current total: 583 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.98292 26.92266 -16.09173 3.76900 4.66099 24.23541 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 189 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 158 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 145 Spheres center of coords (x y z): 19.1907066896552 -9.74869496551724 13.8053022758621 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.1258896007267 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 23