usefragsph not on There are 25 ligand heavy atoms Ligand center of coords (x y z): -17.68192 9.3972 -11.91196 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1233 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 579 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 575 Number of spheres polar: 127, nonpolar: 327, out of current total: 575 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -27.53403 -7.70223 0.22709 19.37912 -19.28231 -2.40397 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 295 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 262 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 243 Spheres center of coords (x y z): -21.4339993827161 10.780382345679 -10.0520299588477 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.79417698920767 Final number of output spheres is: 60 Number of polar spheres: 12 Number of nonpolar spheres: 45 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 25