usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): 16.1812352941176 -7.98535294117647 17.3952352941176 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 852 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 481 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 475 Number of spheres polar: 124, nonpolar: 243, out of current total: 475 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.21853 26.17543 -17.91427 1.48468 7.41159 26.93870 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 179 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 139 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 128 Spheres center of coords (x y z): 18.490498671875 -11.53603234375 16.00478546875 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.19773920423294 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 17