usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 16.5886666666667 -7.70479166666667 13.8239166666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1077 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 646 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 637 Number of spheres polar: 117, nonpolar: 390, out of current total: 637 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.59132 26.49382 -17.66446 1.49978 3.89575 23.76745 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 227 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 185 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 164 Spheres center of coords (x y z): 18.4949007926829 -11.3787004268293 13.312302804878 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.81598781776979 Final number of output spheres is: 45 Number of polar spheres: 8 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 24