usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 17.3762173913043 9.9495652173913 -12.0072608695652 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1274 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 635 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 633 Number of spheres polar: 150, nonpolar: 346, out of current total: 633 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.48159 27.22277 0.14828 18.48256 -21.97118 -2.04400 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 332 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 297 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 273 Spheres center of coords (x y z): 21.7947289010989 8.82296307692308 -12.2310557509158 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.56064630614982 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 46 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 23