usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 16.9444827586207 -6.63855172413793 14.2864827586207 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1369 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 582 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 582 Number of spheres polar: 120, nonpolar: 381, out of current total: 582 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.00007 26.91742 -16.63513 3.33689 4.28661 24.23276 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 300 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 257 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 209 Spheres center of coords (x y z): 17.2285746889952 -9.95114009569378 14.971844354067 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.24834212531911 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 43 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 29