usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 17.0443 -7.75525 16.8372 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 959 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 637 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 636 Number of spheres polar: 113, nonpolar: 364, out of current total: 636 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.21741 27.01892 -17.62696 2.22410 7.07000 26.83490 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 331 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 289 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 271 Spheres center of coords (x y z): 19.7857305904059 -11.5031947601476 14.255551402214 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.35506978255283 Final number of output spheres is: 60 Number of polar spheres: 11 Number of nonpolar spheres: 44 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 20