usefragsph not on
There are 25 ligand heavy atoms
Ligand center of coords (x y z): -8.8938 3.12232 6.02436
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1069
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 603
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 600
Number of spheres polar: 120, nonpolar: 380, out of current total: 600
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -18.81527 0.96757 -6.71313 12.31874 -3.96834 16.00170
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 293
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 253
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 243
Spheres center of coords (x y z): -9.68049098765432 3.45008588477366 9.99705222222222
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.1182346578313
Final number of output spheres is: 60
Number of polar spheres: 11
Number of nonpolar spheres: 45
Number of spheres that are near neither polar nor nonpolar receptor atoms: 4
Final number of spheres that are from crystallographic ligand: 25