usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 16.584 -7.19945833333333 15.1447916666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 977 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 521 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 521 Number of spheres polar: 112, nonpolar: 306, out of current total: 521 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.61463 26.58324 -17.16784 2.07022 5.28698 24.64172 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 181 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 157 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 150 Spheres center of coords (x y z): 19.0415823333333 -9.8437204 14.3753549333333 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.87391582153229 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 24