usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 16.6185833333333 -7.13441666666667 15.260125 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1110 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 574 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 555 Number of spheres polar: 81, nonpolar: 380, out of current total: 555 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.67195 26.57298 -17.08706 2.60254 5.32769 24.74354 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 183 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 151 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 122 Spheres center of coords (x y z): 17.9957659016393 -10.793597295082 15.6598466393443 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.15883592995703 Final number of output spheres is: 45 Number of polar spheres: 9 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 24