usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 19.5958 -14.95495 18.9005 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 729 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 555 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 538 Number of spheres polar: 123, nonpolar: 263, out of current total: 538 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.68070 29.39009 -21.44657 -4.97900 9.15738 28.86707 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 314 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 272 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 265 Spheres center of coords (x y z): 18.7904291320755 -12.5588340754717 17.9561906037736 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.45790866171398 Final number of output spheres is: 60 Number of polar spheres: 6 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 24 Final number of spheres that are from crystallographic ligand: 20