usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 16.365 9.43626315789474 -12.784 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1112 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 552 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 552 Number of spheres polar: 151, nonpolar: 283, out of current total: 552 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.38024 26.35404 -0.37002 18.18473 -22.77856 -4.04706 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 294 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 251 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 232 Spheres center of coords (x y z): 20.8525034051724 8.01216693965518 -13.5834402586207 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.29540561982902 Final number of output spheres is: 60 Number of polar spheres: 16 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 19