usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 16.9525 -6.35665384615385 14.2395 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1147 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 546 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 546 Number of spheres polar: 103, nonpolar: 361, out of current total: 546 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.03824 26.93146 -16.29650 3.54605 4.61079 24.23831 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 174 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 143 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 130 Spheres center of coords (x y z): 19.1069073076923 -9.80316384615384 14.4311164615385 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.64432315457603 Final number of output spheres is: 45 Number of polar spheres: 6 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 26