usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 16.5525833333333 -7.191375 15.0185416666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1072 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 574 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 574 Number of spheres polar: 151, nonpolar: 315, out of current total: 574 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.55856 26.53744 -17.18120 2.47600 5.06082 24.64341 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 188 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 164 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 150 Spheres center of coords (x y z): 19.0853608666667 -9.83078253333334 14.0323678666667 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.02112874681094 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 24