usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 16.5595833333333 -7.176 14.964875 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1085 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 555 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 555 Number of spheres polar: 139, nonpolar: 318, out of current total: 555 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.58441 26.54876 -17.07354 2.50600 5.05276 24.64946 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 183 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 153 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 139 Spheres center of coords (x y z): 19.1027115827338 -9.91671251798561 14.1997958273381 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.9189741199951 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 24