usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 16.4458333333333 -7.04066666666667 14.9175833333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1054 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 536 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 536 Number of spheres polar: 119, nonpolar: 308, out of current total: 536 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.60667 26.44489 -16.95729 2.90404 5.32064 24.47507 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 186 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 153 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 135 Spheres center of coords (x y z): 18.3042962962963 -10.4962051111111 14.7440880740741 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.41302129417626 Final number of output spheres is: 45 Number of polar spheres: 9 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 24