usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 16.4498333333333 -7.05279166666667 14.63775 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1015 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 562 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 561 Number of spheres polar: 100, nonpolar: 361, out of current total: 561 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.50047 26.44549 -16.95069 2.73837 4.72628 24.37505 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 188 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 151 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 141 Spheres center of coords (x y z): 18.680104964539 -10.2297556737589 14.0472353191489 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.78487037223512 Final number of output spheres is: 45 Number of polar spheres: 7 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 24