usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 16.5450416666667 -6.88195833333333 14.8022916666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1113 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 575 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 575 Number of spheres polar: 132, nonpolar: 350, out of current total: 575 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.55166 26.52444 -16.74017 2.99725 5.33700 24.56157 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 194 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 157 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 148 Spheres center of coords (x y z): 18.5255829054054 -10.0355447297297 14.4255648648649 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.71522510447395 Final number of output spheres is: 45 Number of polar spheres: 8 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 24