usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 16.5042916666667 -7.08604166666667 15.0247083333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1048 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 578 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 577 Number of spheres polar: 113, nonpolar: 355, out of current total: 577 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.67003 26.49120 -17.08340 1.78767 5.08497 24.58405 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 295 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 253 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 227 Spheres center of coords (x y z): 18.3119542290749 -10.3952650660793 14.7256803964758 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.3017363967398 Final number of output spheres is: 60 Number of polar spheres: 10 Number of nonpolar spheres: 47 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 24