usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 16.648375 -7.26408333333333 14.8945833333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1122 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 591 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 590 Number of spheres polar: 122, nonpolar: 366, out of current total: 590 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.64974 26.63886 -17.09862 2.70377 4.97800 24.58580 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 284 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 237 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 224 Spheres center of coords (x y z): 18.9742876339286 -9.66998513392856 14.0380564285714 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.64146836631648 Final number of output spheres is: 60 Number of polar spheres: 7 Number of nonpolar spheres: 50 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 24