usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 67.5497916666667 38.8910416666667 89.0352916666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1335 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 769 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 755 Number of spheres polar: 123, nonpolar: 456, out of current total: 755 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 58.90675 77.46551 29.10676 48.69383 79.04249 98.97636 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 401 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 353 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 339 Spheres center of coords (x y z): 68.6874651622419 36.5352749557522 86.3720631858407 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.65614798433757 Final number of output spheres is: 60 Number of polar spheres: 10 Number of nonpolar spheres: 49 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 24