usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 67.6312962962963 35.5144444444444 87.2173333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1057 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 723 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 712 Number of spheres polar: 150, nonpolar: 370, out of current total: 712 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 58.09982 77.60099 25.84435 45.44527 77.28775 97.20900 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 390 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 346 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 340 Spheres center of coords (x y z): 68.8510204411764 36.2247005 85.8405765882352 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.76570176253186 Final number of output spheres is: 60 Number of polar spheres: 7 Number of nonpolar spheres: 42 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 27