usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 16.6453448275862 -6.7141724137931 14.1237931034483 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1194 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 618 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 618 Number of spheres polar: 134, nonpolar: 393, out of current total: 618 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.04606 26.51459 -16.63174 3.20693 4.29456 23.99499 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 196 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 162 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 148 Spheres center of coords (x y z): 18.658877027027 -10.0109674324324 14.1425391216216 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.42159635821167 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 29