usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 23.6228275862069 7.14913793103448 15.9541724137931 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1725 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1062 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1061 Number of spheres polar: 294, nonpolar: 369, out of current total: 1061 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 13.73228 33.36831 -2.78192 17.14071 5.95874 25.88109 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 406 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 337 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 321 Spheres center of coords (x y z): 21.6732465420561 9.37799028037383 15.8479089096573 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.67235582104603 Final number of output spheres is: 45 Number of polar spheres: 23 Number of nonpolar spheres: 14 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 29