usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 24.1655416666667 7.196375 14.7753333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1568 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1056 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1044 Number of spheres polar: 326, nonpolar: 351, out of current total: 1044 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 14.30023 34.06856 -2.79456 17.09036 4.78095 24.77380 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 621 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 528 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 495 Spheres center of coords (x y z): 22.7432297171717 9.17102688888888 14.9112073737374 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.30795687882472 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 17 Final number of spheres that are from crystallographic ligand: 24