usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 24.3071724137931 7.38775862068966 14.8364137931035 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1502 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 921 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 911 Number of spheres polar: 284, nonpolar: 294, out of current total: 911 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 14.32107 34.19170 -2.61176 17.37974 4.83867 24.80730 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 574 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 494 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 472 Spheres center of coords (x y z): 22.7045765889831 9.13490716101695 14.7893164194915 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.20775363433971 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 17 Final number of spheres that are from crystallographic ligand: 29