usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 81.1079130434783 6.21226086956522 30.5999130434783 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1320 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 841 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 832 Number of spheres polar: 339, nonpolar: 276, out of current total: 832 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 71.15082 91.09858 -2.82692 15.95645 20.60915 40.59518 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 507 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 408 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 374 Spheres center of coords (x y z): 83.2997015508021 6.54734954545454 30.5693737165776 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.24768279411483 Final number of output spheres is: 60 Number of polar spheres: 24 Number of nonpolar spheres: 15 Number of spheres that are near neither polar nor nonpolar receptor atoms: 21 Final number of spheres that are from crystallographic ligand: 23