usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 23.5567368421053 5.73510526315789 14.3991052631579 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1269 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 873 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 868 Number of spheres polar: 322, nonpolar: 294, out of current total: 868 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 13.63177 33.40369 -4.25921 15.72556 4.40005 24.39868 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 308 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 259 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 225 Spheres center of coords (x y z): 20.6715064444444 7.62529351111111 12.7424561777778 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.78068851456532 Final number of output spheres is: 45 Number of polar spheres: 21 Number of nonpolar spheres: 14 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 19